{ "_id": "6ac36ad4d743750d376dbafb", "Package": "idr", "Type": "Package", "Title": "Irreproducible Discovery Rate", "Version": "1.3", "Date": "2022-06-20", "Author": "Qunhua Li", "Maintainer": "Qunhua Li ", "Description": "This is a package for estimating the copula mixture model\nand plotting correspondence curves. Details are in \"Measuring\nreproducibility of high-throughput experiments\" (2011), Annals\nof Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown,\nHuang, and Bickel.", "License": "GPL (>= 2.0)", "LazyLoad": "yes", "Packaged": { "Date": "2026-10-05 09:12:00 UTC", "User": "root" }, "NeedsCompilation": "no", "Repository": "https://qlilab.r-universe.dev", "Date/Publication": "2022-06-21 06:30:07 UTC", "RemoteUrl": "https://github.com/cran/idr", "RemoteRef": "HEAD", "RemoteSha": "4fa51a408935584f97292a091cf32c6e307d9cc6", "_user": "qlilab", "_type": "src", "_file": "idr_1.3.tar.gz", "_fileid": "https://r2.ropensci.org/f57e4574b11066856b1a74aac0d65fd1d7d4d5c05015ea84a64a4e58d533b644", "_filesize": 134358, "_sha256": "f57e4574b11066856b1a74aac0d65fd1d7d4d5c05015ea84a64a4e58d533b644", "_expires": "2027-01-13T09:16:02.000Z", "_created": "2026-10-05T09:12:00.000Z", "_published": "2026-10-05T09:16:04.346Z", "_jobs": [ { "job": 111693022988, "time": 129, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11336035246" }, { "job": 111693023004, "time": 80, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11334944862" }, { "job": 111693023082, "time": 201, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11335641664" }, { "job": 111693022893, "time": 149, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11335547369" }, { "job": 111692174887, "time": 138, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11335620680" }, { "job": 111693022918, "time": 62, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11335745715" }, { "job": 111693023057, "time": 56, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11335775769" }, { "job": 111693023087, "time": 69, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11335446817" }, { "job": 111693022982, "time": 83, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11335815704" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481", "_status": "success", "_upstream": "https://github.com/cran/idr", "_commit": { "id": "4fa51a408935584f97292a091cf32c6e307d9cc6", "author": "Qunhua Li ", "committer": "cran-robot ", "message": "version 1.3\n", "time": 1655793007 }, "_maintainer": { "name": "Qunhua Li", "email": "qunhua.li@psu.edu", "login": "qlilab", "description": "We are a group of statisticians and bioinformaticians who develop computational and statistical tools for analyzing omics data ", "uuid": 29176945 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "stats", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 3, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "qlilab", "count": 1, "uuid": 29176945 } ], "_userbio": { "uuid": 29176945, "type": "user", "name": "Qunhua Li's Lab at Penn State University", "followers": 2, "description": "We are a group of statisticians and bioinformaticians who develop computational and statistical tools for analyzing omics data " }, "_downloads": { "count": 436, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/idr" }, "_mentions": 3, "_searchresults": 51, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/idr.html", "extra/manual.pdf" ], "_realowner": "qlilab", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2011-06-15" }, { "version": "1.1", "date": "2011-07-23" }, { "version": "1.1.1", "date": "2012-10-27" }, { "version": "1.2", "date": "2014-09-04" }, { "version": "1.3", "date": "2022-06-21" } ], "_exports": [ "comp.uri", "d.binormal", "e.step.2normal", "est.IDR", "get.correspondence", "get.pseudo.mix", "get.uri.2d", "loglik.2binormal", "m.step.2normal", "select.IDR" ], "_datasets": [ { "name": "salmon", "title": "Salmon data", "object": "salmon", "file": "salmon.rda", "class": [ "data.frame" ], "fields": [ "year", "spawners", "recruits" ], "rows": 28, "table": true, "tojson": true }, { "name": "simu.idr", "title": "Simulated data", "object": "simu.idr", "file": "simu.idr.rda", "class": [ "data.frame" ], "fields": [ "x", "y", "labels" ], "rows": 1000, "table": true, "tojson": true } ], "_help": [ { "page": "idr-package", "title": "Irreproducible discovery rate", "topics": [ "idr-package", "idr" ] }, { "page": "est.IDR", "title": "Estimate the irreproducible discovery rate using the copula mixture model", "topics": [ "est.IDR" ] }, { "page": "get.correspondence", "title": "Compute correspondence profiles", "topics": [ "get.correspondence" ] }, { "page": "salmon", "title": "Salmon data", "topics": [ "salmon" ] }, { "page": "select.IDR", "title": "Select observations according to IDR", "topics": [ "select.IDR" ] }, { "page": "simu.idr", "title": "Simulated data", "topics": [ "simu.idr" ] } ], "_rundeps": [], "_score": 3.1389339402569236, "_indexed": true, "_nocasepkg": "idr", "_universes": [ "qlilab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3", "date": "2026-10-05T09:14:12.000Z", "distro": "resolute", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/7f5d6201eb9aa1638b48b89b815d1a77964f08c1e3e8c3097df5614a957ee5ed", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.6.1", "os": "linux", "version": "1.3", "date": "2026-10-05T09:13:26.000Z", "distro": "resolute", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/6fe35e15b20c2668e2ea9a8b80b030c94e63415edb15129b69ebb9d4a4ae5e0f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.5.3", "os": "mac", "version": "1.3", "date": "2026-10-05T09:14:45.000Z", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/18f0afd39611fe1e6c69b7fc36c83f9e36ff545dcc0506c03023eea61101bf2b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.6.1", "os": "mac", "version": "1.3", "date": "2026-10-05T09:14:06.000Z", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/2f768a3b3595d673c94ec597d79bb2f781218736a1fc3cd23d51e281412ebedf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.6.0", "os": "wasm", "version": "1.3", "date": "2026-10-05T09:13:17.000Z", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/9ab0c9d7e725796fd27d36c6e470bcedcc04502178c7603bbec87c5252a1cadb", "status": "success", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.7.0", "os": "win", "version": "1.3", "date": "2026-10-05T09:12:55.000Z", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/f1444d8bd9a17dc871476a9f6e318e471828e84658b3093009e2adb4e09ecbf9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.5.3", "os": "win", "version": "1.3", "date": "2026-10-05T09:13:08.000Z", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/00260b66b2e74672bea66bb31ca6e64a53a12ff3d02ab4c9380b49a6c1e3a79f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" }, { "r": "4.6.1", "os": "win", "version": "1.3", "date": "2026-10-05T09:13:24.000Z", "commit": "4fa51a408935584f97292a091cf32c6e307d9cc6", "fileid": "https://r2.ropensci.org/60a34b7dbf7a01e4704d226cb07de6bd0a05bd971f97889aa0d98607c57f998d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/qlilab/actions/runs/37288192481" } ] }